RSEPedia Top Dependencies

We use CiteLang to clone software repositories, parse dependency files, and assemble them into one common structure to assess the value of any particular dependency across the ecosystem. Each credit value represents the average credit assigned to a dependency across repositories, where each repository is represented by it's own graph that allocates 50% of credit to the repository itself, and 50% to its dependencies. The data here is biased of course in that there are more repos that have Python and R. To get around this, we can look at the same tables scoped to specific languages:

Software Credit

Manager Name Credit
pypi numpy 0.08607293616099625
pypi matplotlib 0.030069704478821492
cran R 0.014768251618521366
pypi scipy 0.012141091423133034
pypi pytest 0.010767695037050565
cran jsonlite 0.010170490613080323
cran testthat 0.010050991307370794
pypi typing-extensions 0.009754899647610593
pypi sphinx 0.007701333901287245
cran httr 0.0073885787361547784
cran knitr 0.007099050978315129
cran rmarkdown 0.006670995292575805
spack zlib 0.006538732479356426
cran utils 0.006303793881784361
cran methods 0.00597171439452499
pypi six 0.00574122355397325
spack gnuconfig 0.00534459288406502
cran covr 0.005324988971473791
pypi cycler 0.0051110096101121116
pypi h5py 0.004730364249807331
pypi colorama 0.004557819335752538
pypi pytz 0.004345010894631485
pypi biopython 0.004338814205192016
pypi pytest-cov 0.004125116250122426
pypi python-dateutil 0.004018021529135162
pypi pyyaml 0.0036222217599223352
cran tidyr 0.003576257968529663
pypi cython 0.0032890353464405902
pypi numba 0.0031736441048111986
pypi packaging 0.003167906022887805
pypi docutils 0.003147475030399196
pypi pandas 0.0031285641529887726
spack rhash 0.003100712003763004
spack python 0.002728387293729698
cran magrittr 0.002699377123770551
pypi requests 0.002612903663380125
pypi pysam 0.0026052823101511895
cran rlang 0.0025793456031764734
cran stats 0.002548312934364625
pypi PyYAML 0.002524269261708212
pypi hypothesis 0.002518508543691639
pypi setuptools 0.002476210694253199
pypi tomli 0.002474822962635473
pypi coverage 0.002451236404417542
pypi importlib-metadata 0.00238841124774335
pypi sphinx-rtd-theme 0.0023864754657249992
pypi future 0.0022782808042759806
pypi certifi 0.0021351033841944867
cran withr 0.0021073781262596915
pypi pytest-xdist 0.002077822489253791
pypi MarkupSafe 0.002067693068292586
pypi flake8 0.0020259610762294903
cran tibble 0.0020071614553750917
cran yaml 0.0019142371172051105
spack pkgconfig 0.0019121744596522976
pypi astropy 0.0019036967747715918
pypi lxml 0.0018778338516290472
pypi nose 0.0018457106124264956
spack cmake 0.0018424688276580988
pypi mock 0.0018231562239755064
cran Rcpp 0.001786500630744109
spack openmp 0.0017618533120095214
pypi sphinx-astropy 0.0017510986782749037
pypi pycparser 0.0017284417645580064
cran tools 0.0017159114849133047
pypi seaborn 0.001706628338036628
spack ncurses 0.0016698636149136267
pypi sklearn 0.0016213649314408681
pypi joblib 0.0016153928373646865
pypi wheel 0.001590976960628414
pypi pytest-doctestplus 0.0015904309198492674
pypi idna 0.0015726836514946907
cran curl 0.001554066692413249
pypi Sphinx 0.0015536369572444065
pypi mpmath 0.001550078255633666
cran grDevices 0.0015484465705380725
cran graphics 0.001500962467013498
pypi ipython 0.0014953298765489592
cran ggplot2 0.0014666062267654674
cran vctrs 0.0014567268888935154
cran R6 0.0014408502216032438
spack libbsd 0.0014376651935509828
pypi chardet 0.0014110354514946708
cran crayon 0.0013274105038579064
cran pryr 0.0013057001029133763
cran dplyr 0.0012851771414349499
pypi Jinja2 0.001271265476600901
pypi astroquery 0.0012635393204914194
cran glue 0.0012169550291901733
pypi statsmodels 0.0011686296301574852
pypi dask 0.0011431616005544566
pypi twine 0.0011262705906706129
pypi mypy 0.0011259829078911693
pypi PySocks 0.0011251052131731785
pypi html5lib 0.0011090910822881264
cran spelling 0.0011063711480966342
pypi urllib3 0.0011053370630422013
pypi protobuf 0.0011034657032988726
pypi importlib-resources 0.0010709201551397445
pypi Babel 0.00106461736985795
pypi ipywidgets 0.0010461691654589317
pypi pillow 0.0010356782383155883
pypi numpydoc 0.0010170235181309237
pypi click 0.000996376661228161
spack qt 0.000993538156125578
pypi beautifulsoup4 0.0009912647875741315
spack py-sphinx 0.0009910132174071504
cran htmltools 0.0009879769807716763
pypi pygments 0.0009814925584754242
spack openssl 0.0009702872926564587
spack bzip2 0.0009667155762318002
cran tinytest 0.0009648838758184285
cran digest 0.000962100715439997
pypi jinja2 0.0009539122544106966
pypi healpy 0.0009481975418665922
pypi lmfit 0.000948170232197279
pypi keras 0.000946844136394351
spack mpi 0.0009418124010284676
pypi pytest-black 0.0009399661046801013
pypi graphviz 0.0009361326087425099
spack autoconf 0.0009330372660533539
cran roxygen2 0.0009312046076802924
spack libtool 0.0009307604910052357
pypi sortedcontainers 0.0009281300775480755
spack automake 0.0009277347140537816
pypi Cython 0.00091535984841761
spack m4 0.0009019458415177352
pypi psutil 0.0008890176219045016
cran MASS 0.0008848894331429506
pypi attrs 0.0008824942682585545
pypi argparse 0.0008762107833155941
pypi tornado 0.00085945451933504
pypi networkx 0.0008585278987362476
spack libxml2 0.0008584628713137612
cran lattice 0.0008511926502087113
pypi pyparsing 0.0008452622626159016
pypi toml 0.0008429098227572254
pypi pyerfa 0.0008338196244899531
spack perl 0.0008243723468136365
pypi docopt 0.0008218384942639627
spack threads 0.0008138032999934198
pypi contextlib2 0.0008114754759556881
pypi pre-commit 0.0008089115157701184
pypi jplephem 0.0008001248263533056
pypi pytest-astropy 0.0007963809191233215
pypi pyarrow 0.0007917185684551295
pypi jupyter 0.000791576443215309
cran rstudioapi 0.0007862910410928372
pypi photutils 0.0007830887895769547
pypi black 0.000779425851017146
pypi llvmlite 0.0007791060114876391
pypi bleach 0.0007731386360899368
cran stringi 0.0007668541157004624
cran rbenchmark 0.0007654123369326437
pypi slack-sdk 0.0007624138580970336
pypi bottleneck 0.0007611055019986574
cran mockery 0.0007586886085853501
cran xml2 0.0007578240505203049
pypi skyfield 0.0007545576014281556
cran bit64 0.0007431983443813211
cran cli 0.0007427377515131903
pypi py-make 0.0007412127386840739
cran pillar 0.0007403322881471031
pypi mpi4py 0.0007387627905695415
pypi cryptography 0.0007362293202609279
pypi asdf 0.0007300096441002647
pypi pycodestyle 0.0007296009454325339
pypi et-xmlfile 0.0007267408707567547
pypi objgraph 0.0007261745177133425
pypi defusedxml 0.0007189135286678694
spack ca-certificates-mozilla 0.000718154438111547
spack nasm 0.000718154438111547
cran purrr 0.0007181395538228113
cran shiny 0.0007114491327618791
pypi sympy 0.0006999140622088526
cran lifecycle 0.0006993137285033681
pypi atomicwrites 0.0006933119124962465
pypi toolz 0.0006865189637882068
rubygems rake 0.0006837280374933928
pypi sphinxext-opengraph 0.0006833662345569212
pypi tqdm 0.0006785292302854289
cran tidyselect 0.0006772652488233854
pypi setuptools_scm 0.0006741561478914433
spack xz 0.0006728160807491675
pypi dataclasses 0.0006697547331698259
cran grid 0.0006681136708545741
spack expat 0.0006672037972251973
cran callr 0.000664838549062876
pypi py 0.0006596876605380679
pypi sgp4 0.0006508974217874375
pypi cloudpickle 0.0006322442491833281
pypi sphinx-gallery 0.0006161894145912029
pypi wrapt 0.0006151105151289333
pypi cffi 0.0006080219039813852
cran DBI 0.0006062813425781541
cran zoo 0.0006011245467056538
pypi pybedtools 0.0006003014301549904
cran sp 0.0005989362468828698
pypi sphinx-copybutton 0.0005975884253713635
pypi iniconfig 0.0005953672532126003
pypi virtualenv 0.0005950912857430239
pypi wcwidth 0.0005934300815903807
pypi scikit-learn 0.0005847591812473421
pypi ruamel.yaml 0.0005840559270191113
cran parallel 0.0005786490429287662
pypi isal 0.0005765924073727545
cran pracma 0.0005741063337109121
pypi zipp 0.0005699103779990563
cran RSQLite 0.0005695581196370151
pypi charset-normalizer 0.0005692134594331975
cran stringr 0.0005665767729638782
pypi filelock 0.0005652248276691209
pypi scikit-image 0.0005633478857971475
pypi pytest-astropy-header 0.0005623316484139816
pypi pluggy 0.0005587002439559725
spack eigen3 0.0005569985029940121
cran htmlwidgets 0.0005534357692002691
pypi regex 0.0005532250614565883
pypi typing_extensions 0.0005525255749738465
pypi lightkurve 0.0005520137025285157
cran hms 0.0005502727638563781
pypi unicodedata2 0.0005498829090903078
spack python3 0.0005495883233532935
pypi sphinx-changelog 0.0005458794944697193
pypi Pillow 0.0005390574823084932
pypi traitlets 0.0005389834005926223
pypi xmltodict 0.000534766627459367
pypi jax 0.0005337284618489137
pypi absl-py 0.0005309833486900573
cran processx 0.000528156931270552
cran markdown 0.000527000318934986
cran scales 0.0005249015888847573
pypi pytest-timeout 0.0005220411756342482
pypi appdirs 0.0005213982305292356
pypi pytest-flake8 0.000520865972879378
pypi termcolor 0.0005191591074441559
pypi rst.linker 0.0005155570445533479
pypi jaraco.packaging 0.0005155570445533479
pypi PyQt5-sip 0.000508945295336285
pypi win-inet-pton 0.0004993250711565379
pypi dill 0.0004982209039116428
pypi pytest-checkdocs 0.0004954837015518508
pypi pytest-mypy 0.0004949358656031037
pypi pytest-enabler 0.0004939390984698619
pypi pathlib 0.0004902992769712677
cran bitops 0.0004885940870546474
spack mbedtls 0.00048710936393104974
pypi webencodings 0.0004860107996775361
pypi argcomplete 0.0004860088621462416
pypi pywin32 0.0004852829969516399
pypi more-itertools 0.00048494067850858005
pypi itsdangerous 0.0004793007982589595
pypi enum34 0.00047604540242426207
pypi pyfaidx 0.0004737296423062718
cran R.utils 0.00046615153013229645
pypi threadpoolctl 0.00046487260789384314
pypi check-manifest 0.00046486917070572795
pypi cobaya 0.0004631362275449103
pypi numexpr 0.0004605991078357009
pypi brotli 0.00045709003125683377
pypi ephem 0.000454328085659686
cran microbenchmark 0.00045285051722565665
pypi types-setuptools 0.0004503795013018412
pypi olefile 0.0004424079281354538
pypi tenacity 0.00044234022342128483
pypi pydata-sphinx-theme 0.0004417634625529402
pypi decorator 0.0004393534534933748
pypi msgpack 0.0004392895702747863
pypi markdown2 0.0004392411846992493
pypi readthedocs-sphinx-search 0.00043746687311467297
pypi SQLAlchemy 0.0004329641627019829
pypi xmlschema 0.0004327769060405474
pypi isort 0.00043189200302544856
cran nycflights13 0.0004305040250995262
pypi kiwisolver 0.0004274511658275933
cran Matrix 0.0004237598811175839
pypi sphinx-issues 0.00042242007708260095
cran RColorBrewer 0.0004208243130411316
pypi pyroma 0.0004164627727237891
spack diffutils 0.0004153045418560272
pypi imageio 0.00041440158866975607
pypi PyQt5-Qt5 0.00041012773568345105
pypi codecov 0.0004052461000433224
pypi sphinx-removed-in 0.00040519719845299177
pypi multiprocess 0.00040128948089720865
cran broom 0.0003994583493548843
pypi alabaster 0.00039875093052356696
spack gtest 0.00039873823781009414
pypi snowballstemmer 0.0003965617293505001
cran sf 0.00039563883734468206
rubygems webrick 0.00039208290957148213
cran maptools 0.00038905639783090535
pypi sphinx-book-theme 0.000388114038470218
pypi imagesize 0.00038626981318283537
pypi plotly 0.00038591737222081753
cran xts 0.00038483482020655813
pypi netCDF4 0.0003842765153241847
cran ellipsis 0.0003830283222423308
pypi watchdog 0.0003796655493250165
pypi ipykernel 0.00037804654936438606
cran plyr 0.00037459157701607936
cran bench 0.0003745025500162069
spack icu4c 0.0003720054591623767
cran nanotime 0.0003706826733235544
cran rgl 0.0003704522658731622
pypi fitsio 0.0003693755346449957
cran bit 0.00036934892426198284
pypi nbformat 0.00036871720767227755
spack gmake 0.00036853945158834704
spack lz4 0.00036808185321843235
pypi torch 0.0003678683416517033
pypi wget 0.0003662946358223402
pypi docutils-stubs 0.00036622882101347765
pypi process-tests 0.0003651785939944329
pypi fields 0.0003651785939944329
spack gettext 0.0003626008143616131
cran mime 0.00036222605740354876
cran fs 0.00036133693627828886
pypi nbconvert 0.0003584103705168393
pypi gym 0.0003574422105916214
pypi backports.functools-lru-cache 0.0003566607957469706
pypi memory-profiler 0.0003565041547805172
cran generics 0.00035581550769691017
spack py-numpy 0.00035473781470240633
pypi hunter 0.0003539440785331681
pypi smmap 0.0003517894064975517
pypi railroad-diagrams 0.00034709618451329275
pypi munkres 0.0003460786606951692
pypi typing 0.0003459454313024935
cran rgeos 0.00034563949357636003
pypi execnet 0.0003444140430747318
spack bison 0.00034394187707136015
pypi dynesty 0.000341186945166134
pypi fonttools 0.00033914940884760005
cran evaluate 0.0003387177859954548
pypi Pygments 0.00033751482277027804
pypi cachetools 0.00033557822928813145
spack slicer 0.000335310628742515
npm express 0.00033400489055117647
pypi pyproj 0.0003331678941610953
rubygems bundler 0.0003316358056382039
pypi fsspec 0.00033118651610853825
pypi xarray 0.00033084674905107375
spack pybind11 0.0003308115911035073
cran tcltk 0.0003267294627408851
pypi sqlalchemy 0.00032610221830864405
spack pythoninterp 0.0003249078765545832
cran webmockr 0.00032446646047018366
spack sqlite 0.00032413296050590976
cran unix 0.00032295046337210036
pypi jsonschema 0.00032221166741770236
npm core-js 0.0003206675266097985
pypi pandoc 0.00031923246074562673
spack lapack 0.0003192160367842453
pypi flatbuffers 0.0003181043955023314
pypi schwimmbad 0.0003165279425514879
cran pkgload 0.00031600668770618765
spack ninja 0.000314685645331388
cran mvtnorm 0.00031382818522788066
cran maps 0.00031216936990589714
pypi pip 0.0003119427524068583
spack zstd 0.00031160650188660896
cran usethis 0.00030963072371447233
pypi python 0.00030905674954228587
npm lodash 0.0003033697676940739
pypi astroscrappy 0.0003019500101788182
pypi setproctitle 0.0003009465578968939
cran httpcode 0.00030021466272638563
pypi babel 0.0003000952728330164
pypi ujson 0.00030001332277261914
pypi numdifftools 0.0002996434799499145
pypi locket 0.00029793777192991985
spack nss 0.0002971037057694362
spack libffi 0.0002944825234823984
spack tk 0.00029386359324693666
pypi python-magic 0.00029375935628742517
pypi python-casacore 0.00029340861388750934
spack readline 0.0002931816032864585
pypi pooch 0.00029134560990415494
pypi pytest-forked 0.0002912992593335367
pypi myst-nb 0.0002907166520491362
pypi dnaio 0.00029057938809880246
cran nlme 0.0002888030475653848
cran ncdf4 0.0002877529172434532
pypi palettable 0.00028772696406736465
cran igraph 0.00028724153267478155
pypi ipaddress 0.00028678608322408314
cran data.table 0.00028629665081299243
pypi Flask 0.00028587110743527806
cran blob 0.00028531628764377553
pypi pygraphviz 0.0002838256459609551
pypi tensorflow 0.0002832082467451552
spack libidn2 0.0002828127973428141
pypi rich 0.00028151946323384103
cran lubridate 0.0002805301555409147
pypi pexpect 0.00028036669550055975
pypi bump2version 0.00027944266154608573
cran pkgconfig 0.0002791322104523746
cran pkgKitten 0.00027807684157810276
pypi SimpleITK 0.0002779509042852264
pypi grpcio 0.0002734791841365826
cran rprojroot 0.00027280855417640104
pypi entrypoints 0.0002723695236970428
pypi tzdata 0.0002712938730305238
cran inline 0.0002711761117876836
spack tcl 0.0002709572965562198
pypi nanomath 0.00027019086826347307
pypi sphinxcontrib-serializinghtml 0.0002700312562136557
cran httpuv 0.00026963682093793457
pypi cssselect 0.0002694300160450032
cran dbplyr 0.0002679794322055753
spack gdbm 0.00026742977588983195
pypi sphinxcontrib-jsmath 0.0002672153290028915
pypi keyring 0.0002656207579451539
pypi sphinxcontrib-htmlhelp 0.00026371269236635027
pypi sphinxcontrib-applehelp 0.00026371269236635027
pypi sphinxcontrib-devhelp 0.00026371269236635027
pypi sphinxcontrib-qthelp 0.00026371269236635027
cran fauxpas 0.000263349220377388
spack libnsl 0.0002632436264699218
spack tix 0.0002632436264699218
spack uuid 0.00026324362646992176
cran urltools 0.00026278758162073985
spack krb5 0.0002620055513372293
pypi xlsxwriter 0.00026168936024210276
npm mocha 0.0002608038259102926
pypi simplejson 0.00025994747996559495
spack libssh2 0.0002595659124498255
spack libssh 0.0002595659124498255
cran gtable 0.00025954166212668233
pypi pydot 0.0002595160145625689
pypi tox 0.00025862066478013
pypi astroplan 0.0002577763928494848
pypi more_itertools 0.00025642910607356716
pypi brotlicffi 0.00025455333864867543
spack curl 0.0002542779103358539
spack gnutls 0.00025411887465042436
spack nghttp2 0.00025411887465042436
pypi pox 0.0002536845567219241
cran RPostgreSQL 0.00025236505424005765
cran numDeriv 0.0002515532328080475
cran png 0.0002514691858964664
pypi tifffile 0.00025121652886030534
pypi progressbar 0.00025116732700013503
pypi sphinx-autodoc-typehints 0.00024987704653541833
pypi nbsphinx 0.00024953786002119654
pypi PyICU 0.00024921385779570185
pypi fastnumbers 0.00024921385779570185
pypi reno 0.0002484066086748206
cran simplermarkdown 0.00024836180662777304
pypi onnx2keras 0.0002470059880239521
pypi tabulate 0.0002465577459924557
cran brio 0.00024301390843656687
pypi mappy 0.00024221968151608871
pypi pep517 0.00024144227028826418
cran waldo 0.00024125483591095178
pypi pyasn1 0.00024045854347500684
cran XML 0.0002404274849541617
pypi sphinx-prompt 0.00024016275927949966
cran rcrossref 0.0002392870508982036
pypi backports-functools-lru-cache 0.00023859856114636388
cran survival 0.0002378837929160388
cran ragg 0.0002375187148262232
npm axios 0.00023740298825558845
pypi furo 0.00023698294930937964
pypi fs 0.00023545302529015473
pypi lz4 0.00023540822872561917
pypi semver 0.00023510994290076533
spack numpy 0.00023509677074422586
cran foreach 0.00023503301218200223
pypi frozenlist 0.00023426674475448452
spack nettle 0.0002338756329230276
spack lzo 0.00023224152158320726
pypi Markdown 0.0002318466182199105
pypi nfft 0.00023110497754491021
pypi Werkzeug 0.00023017678011069678
pypi commonmark 0.00022949886454833336
pypi ci-info 0.0002284350378190987
pypi wmi 0.00022842159289889575
pypi pytest-asyncio 0.00022832195896358595
spack png 0.0002261054813450023
pypi PyAstronomy 0.00022393473642930376
cran rgdal 0.00022290256969728636
pypi pint 0.0002224890458554012
cran xfun 0.00022222810105192685
cran mgcv 0.00022215158938850685
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pypi pytest-pydocstyle 1.1286273606632889e-06
pypi pytest-pycodestyle 1.1286273606632889e-06
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spack sowing 9.52737382378101e-07
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