RSEPedia Top Python Dependencies

We use CiteLang to clone software repositories, parse dependency files, and assemble them into one common structure to assess the value of any particular dependency across the ecosystem. Each credit value represents the average credit assigned to a dependency across repositories, where each repository is represented by it's own graph that allocates 50% of credit to the repository itself, and 50% to its dependencies.

Software Credit

Manager Name Credit
pypi numpy 0.08781555682489946
pypi matplotlib 0.030843037680413403
pypi scipy 0.011988266764501548
pypi pytest 0.010831194277526995
pypi typing-extensions 0.009573180595032774
pypi sphinx 0.007795781863148415
pypi six 0.005742333824136636
pypi cycler 0.004955574228151109
pypi h5py 0.00468665810231873
pypi colorama 0.004546818248706569
pypi pytz 0.004439873568276247
pypi biopython 0.0044221866577742195
pypi python-dateutil 0.00419479241809107
pypi pytest-cov 0.0041613821086642095
pypi pyyaml 0.003669454146083851
pypi numba 0.0032837033305898795
pypi cython 0.0032590169579353977
pypi pandas 0.0032171082962295073
pypi packaging 0.0031771950922202213
pypi docutils 0.003110535487225366
pypi requests 0.002717508795084154
pypi pysam 0.002597275608360077
pypi hypothesis 0.0025918929185822586
pypi PyYAML 0.0025898535045987665
pypi tomli 0.002536290373990081
pypi setuptools 0.0024809923438968515
pypi coverage 0.0024468830817195816
pypi importlib-metadata 0.0023801389594168463
pypi sphinx-rtd-theme 0.0023447897320942584
pypi future 0.0022908883871452764
pypi certifi 0.0021603480515314335
pypi pytest-xdist 0.0021280066309292515
pypi flake8 0.0020197559571013437
pypi MarkupSafe 0.002001781046692984
pypi astropy 0.001929446590541874
pypi lxml 0.0018334570203230153
pypi mock 0.001825086163478988
pypi nose 0.0017985256480692452
pypi joblib 0.001773939775532382
pypi sphinx-astropy 0.0017163650646074445
pypi seaborn 0.0016891101263964248
pypi pycparser 0.001669702239659796
pypi sklearn 0.0016453749941358787
pypi wheel 0.0016429275277697326
pypi idna 0.0015916282258756182
pypi pytest-doctestplus 0.0015582397868162496
pypi ipython 0.0015416545864300984
pypi mpmath 0.001517976752723491
pypi Sphinx 0.0015094202978005373
pypi chardet 0.0014208028682513273
pypi astroquery 0.001377359035717722
pypi Jinja2 0.00128915636887531
pypi dask 0.001225845550962922
pypi statsmodels 0.0011909174964434648
pypi twine 0.001181428816954766
pypi ipywidgets 0.0011464450501073326
pypi urllib3 0.0011395260054004575
pypi PySocks 0.0011368971923071008
pypi mypy 0.0011243544294432049
pypi importlib-resources 0.0011109666161828512
pypi protobuf 0.0011031816153351437
pypi html5lib 0.0010946295647355005
pypi pillow 0.0010576612185431093
pypi numpydoc 0.0010379875382425228
pypi Babel 0.0010302031304900367
pypi click 0.001027398488505633
pypi beautifulsoup4 0.0009946413347198255
pypi pygments 0.0009934220951999932
pypi jinja2 0.00098756965969725
pypi sortedcontainers 0.0009729453739438361
pypi Cython 0.0009577573235258241
pypi healpy 0.0009352175502369652
pypi graphviz 0.0009253892754761078
pypi psutil 0.0009251980130606327
pypi pytest-black 0.0009250344645798376
pypi lmfit 0.0009202704277976399
pypi keras 0.0009175353305356331
pypi attrs 0.000888981330236361
pypi pre-commit 0.0008886990018123465
pypi toml 0.0008820830725054823
pypi tornado 0.0008758537088747815
pypi argparse 0.0008476266135282962
pypi networkx 0.0008449693448150457
pypi pyparsing 0.0008418825272918564
pypi pyerfa 0.000830145635166379
pypi jplephem 0.0008228207026635897
pypi black 0.0008129127851149351
pypi slack-sdk 0.0008024958962386148
pypi docopt 0.0008012172882043775
pypi pytest-astropy 0.0007949361849890601
pypi setuptools_scm 0.0007904550904745532
pypi pyarrow 0.0007857538232073474
pypi contextlib2 0.0007838982182767889
pypi py-make 0.00078201527763
pypi jupyter 0.0007674160221289966
pypi pycodestyle 0.0007647617864048193
pypi bleach 0.0007636442383166196
pypi photutils 0.0007583137509166078
pypi bottleneck 0.0007551161738463132
pypi llvmlite 0.0007526288006850944
pypi skyfield 0.0007456946632565037
pypi objgraph 0.0007456622370351205
pypi cryptography 0.0007278020588980485
pypi mpi4py 0.0007136566075205403
pypi asdf 0.0007098410744371141
pypi et-xmlfile 0.000708322497366117
pypi defusedxml 0.0006983406306342175
pypi sphinxext-opengraph 0.0006887034034326915
pypi sympy 0.0006885693908254151
pypi tqdm 0.0006873910972909334
pypi toolz 0.0006862073082070917
pypi atomicwrites 0.0006774411393152237
pypi dataclasses 0.0006521568818052254
pypi py 0.0006479340264103967
pypi cloudpickle 0.0006465585064890987
pypi sgp4 0.000645557280754696
pypi wcwidth 0.0006452540293256543
pypi sphinx-gallery 0.0006294743063279226
pypi wrapt 0.0006128589322582849
pypi sphinx-copybutton 0.0006006469916441429
pypi virtualenv 0.0005996690734524162
pypi iniconfig 0.0005966776018788556
pypi filelock 0.0005936508384851498
pypi cffi 0.0005905225669903846
pypi scikit-learn 0.0005858248848080352
pypi pybedtools 0.0005799007307932517
pypi charset-normalizer 0.0005788810575888819
pypi ruamel.yaml 0.0005677670352601013
pypi scikit-image 0.00056704116979427
pypi zipp 0.0005652137233727864
pypi traitlets 0.0005641098790973527
pypi pluggy 0.0005612566876584252
pypi pytest-astropy-header 0.0005600013348205396
pypi isal 0.0005569974376355747
pypi PyQt5-sip 0.0005523461059792311
pypi unicodedata2 0.0005505880988892647
pypi Pillow 0.0005465244042503955
pypi sphinx-changelog 0.0005441082923986057
pypi jax 0.0005418298891412071
pypi appdirs 0.0005417910083575473
pypi typing_extensions 0.0005372543687628626
pypi regex 0.000534424209765728
pypi absl-py 0.0005343658371365533
pypi lightkurve 0.0005332540177715812
pypi xmltodict 0.0005165930688978411
pypi pytest-flake8 0.0005134310125460778
pypi termcolor 0.0005134151843852752
pypi rst.linker 0.0005119182012376939
pypi jaraco.packaging 0.0005119182012376939
pypi threadpoolctl 0.0005078819633617347
pypi pytest-timeout 0.0005076379970849824
pypi dill 0.0005052989708815987
pypi win-inet-pton 0.0005009688852648057
pypi pytest-checkdocs 0.0004925270325825965
pypi pytest-mypy 0.0004919978143414356
pypi argcomplete 0.0004910356564958793
pypi pytest-enabler 0.0004910349214347027
pypi pywin32 0.0004865080144088151
pypi torch 0.00048011427292812847
pypi enum34 0.0004775843511488173
pypi webencodings 0.0004759741270746118
pypi pathlib 0.0004736369009642903
pypi itsdangerous 0.00047341533550409654
pypi more-itertools 0.00046846040960771
pypi numexpr 0.00046349618907958633
pypi pyfaidx 0.00045763037029730963
pypi check-manifest 0.00045331438329772496
pypi cobaya 0.00044739696312364423
pypi isort 0.0004466493102911627
pypi pydata-sphinx-theme 0.00044600681747415785
pypi decorator 0.00044532593823807794
pypi brotli 0.0004441360165751167
pypi types-setuptools 0.00044238632878317214
pypi msgpack 0.00043890346242127557
pypi ephem 0.00043888815794746236
pypi kiwisolver 0.0004363813520863752
pypi tenacity 0.0004343829798498525
pypi xmlschema 0.0004333485434909772
pypi olefile 0.00043123182202155783
pypi markdown2 0.00042817269748737915
pypi PyQt5-Qt5 0.00042706030721120065
pypi readthedocs-sphinx-search 0.0004225999584101251
pypi sphinx-book-theme 0.00042193532352805473
pypi SQLAlchemy 0.0004186349121770804
pypi sphinx-issues 0.00041499263763443726
pypi codecov 0.00041386005825640155
pypi pyroma 0.0004061683891726902
pypi imageio 0.0004058017660705582
pypi ipykernel 0.00040522102346115
pypi multiprocess 0.0004008665335501556
pypi sphinx-removed-in 0.0003952856652205679
pypi plotly 0.00039359482111503045
pypi fitsio 0.0003926143993389113
pypi dynesty 0.0003898445792709875
pypi alabaster 0.00038805730969524046
pypi snowballstemmer 0.000385942506537455
pypi sqlalchemy 0.00038303802162493545
pypi nbformat 0.0003812697514929358
pypi nbconvert 0.000377931290394591
pypi imagesize 0.00037600035180137403
pypi typing 0.00037290317092134343
pypi netCDF4 0.00037273149330610376
pypi watchdog 0.0003696862519148388
pypi memory-profiler 0.00036877914701886156
pypi process-tests 0.0003650720953034102
pypi fields 0.0003650720953034102
pypi schwimmbad 0.00036413256850166217
pypi fsspec 0.0003638511970564035
pypi pip 0.00036264173515764095
pypi docutils-stubs 0.0003566404345647421
pypi execnet 0.0003547481892632963
pypi hunter 0.00035421937465536247
pypi wget 0.00035384644501709804
pypi railroad-diagrams 0.000347709212179712
pypi tensorflow 0.0003474067342173566
pypi gym 0.0003462551280772913
pypi xarray 0.0003453255113009826
pypi fonttools 0.00034478617895407175
pypi cachetools 0.0003445964296131819
pypi backports.functools-lru-cache 0.000344540002254485
pypi xlsxwriter 0.00034227547742837994
pypi smmap 0.00033983416274817714
pypi Pygments 0.0003392487562374833
pypi pydot 0.0003367308185005096
pypi munkres 0.00033479568092634437
pypi pygraphviz 0.0003276763481810908
pypi myst-nb 0.00032685908864790454
pypi pyproj 0.0003257825788859171
pypi pandoc 0.0003251898317688916
pypi rich 0.0003240828834196451
pypi jsonschema 0.0003229509913195583
pypi flatbuffers 0.00031141231763220613
pypi locket 0.0003086346322966002
pypi setproctitle 0.00030680900839916625
pypi ipaddress 0.0003042404738389321
pypi python 0.00029855373636189
pypi pytest-forked 0.000298449831175625
pypi bump2version 0.0002978712964341487
pypi ujson 0.0002955927152889569
pypi babel 0.0002927543750064657
pypi emcee 0.00029236320816887246
pypi astroscrappy 0.0002916885130866964
pypi numdifftools 0.00029039777135539716
pypi pooch 0.0002870487908927252
pypi pexpect 0.00028514396728995155
pypi python-casacore 0.00028394869921247667
pypi python-magic 0.0002837762111352133
pypi dnaio 0.00028070431127982646
pypi tzdata 0.00027806124848383693
pypi palettable 0.00027794882429067194
pypi Flask 0.000277894127073261
pypi entrypoints 0.00027345979333735716
pypi grpcio 0.00027264445153962123
pypi cssselect 0.00027092031986523794
pypi SimpleITK 0.0002699209892536879
pypi sphinxcontrib-serializinghtml 0.00026371205671039494
pypi nanomath 0.0002610086767895879
pypi sphinxcontrib-jsmath 0.0002609918262305822
pypi keyring 0.0002587414861917478
pypi tox 0.0002579478749815982
pypi pox 0.00025767004422555984
pypi sphinxcontrib-devhelp 0.00025760822352167474
pypi sphinxcontrib-qthelp 0.00025760822352167474
pypi sphinxcontrib-applehelp 0.0002576082235216747
pypi sphinxcontrib-htmlhelp 0.0002576082235216747
pypi pyasn1 0.0002554736119934612
pypi simplejson 0.00025332801571513724
pypi tifffile 0.0002527641997718305
pypi sphinx-prompt 0.0002515572202339931
pypi pep517 0.00025146695139421406
pypi nbsphinx 0.0002509063417466992
pypi reno 0.0002505948873388
pypi astroplan 0.00024966506747609485
pypi tabulate 0.00024953431380275704
pypi brotlicffi 0.0002484823496738158
pypi furo 0.00024789706096773283
pypi more_itertools 0.00024771459559962816
pypi sphinx-autodoc-typehints 0.0002475154049708462
pypi bokeh 0.00024308896065033172
pypi progressbar 0.00024263163331321796
pypi Werkzeug 0.0002411461723492694
pypi PyICU 0.0002407445509870265
pypi fastnumbers 0.0002407445509870265
pypi wmi 0.00023924402973638802
pypi onnx2keras 0.0002386117136659436
pypi mappy 0.0002339880654414277
pypi backports-functools-lru-cache 0.0002337056264942459
pypi ruamel.yaml.clib 0.0002332581510628027
pypi lz4 0.00023008334640011165
pypi fs 0.0002279295573536048
pypi semver 0.000227119944841231
pypi pytest-asyncio 0.0002263778031713967
pypi frozenlist 0.00022630540201879336
pypi openpyxl 0.00022421571314029857
pypi Markdown 0.0002240453294558587
pypi nfft 0.00022325108459869848
pypi commonmark 0.00022169955389484696
pypi ci-info 0.00022067188035163832
pypi arviz 0.00021684841795361015
pypi PyAstronomy 0.000216324517620788
pypi gast 0.0002150986386883064
pypi pint 0.0002149279575291511
pypi multidict 0.00021357673399065893
pypi notebook 0.00021282425468283948
pypi tokenize-rt 0.00021272770821635992
pypi aiohttp 0.00021047689020987182
pypi greenlet 0.00021043963079160486
pypi zopfli 0.00020998095481731247
pypi ultranest 0.0002095286237304867
pypi quantities 0.00020841225833607117
pypi pulp 0.00020828563577549104
pypi pyamg 0.00020652861502556825
pypi pyzmq 0.00020643640237661838
pypi psycopg2-binary 0.0002045705913895272
pypi sh 0.00020386100386100386
pypi gmpy2 0.00020348964719897096
pypi skia-pathops 0.00020343331038410117
pypi xattr 0.0002022600829230778
pypi soupsieve 0.0002003786306032492
pypi doit 0.00020025142261479708
pypi gitdb 0.00019993731707574852
pypi pyDOE2 0.00019955502401611404
pypi mpdaf 0.0001985463596418043
pypi redis 0.00019833095088203574
pypi cached-property 0.00019558737967458067
pypi shortuuid 0.00019448352533965092
pypi theano 0.0001940584451701588
pypi requests-toolbelt 0.00019366358193805697
pypi intervaltree 0.0001874136751200166
pypi asv 0.0001871261355202517
pypi jupyter-client 0.0001856011563297672
pypi types-typed-ast 0.0001831141066568042
pypi jmespath 0.00018245912310541556
pypi futures 0.00018123160661976634
pypi pytest-perf 0.0001808866080496117
pypi openphi 0.0001789587852494577
pypi asyncio 0.0001789587852494577
pypi pyusb 0.0001789587852494577
pypi apyori 0.0001789587852494577
pypi pycryptodome 0.0001789587852494577
pypi http 0.0001789587852494577
pypi parsec 0.0001789587852494577
pypi sf_tools 0.0001789587852494577
pypi conan 0.00017893010595694975
pypi llist 0.00017836225596529285
pypi libclang 0.00017813611763031856
pypi umap-learn 0.00017764161984357553
pypi pybind11-global 0.00017708006452930717
pypi flask 0.0001767254905841334
pypi nestle 0.0001743976600853197
pypi edlib 0.0001743906184013723
pypi python-igraph 0.00017354231070582687
pypi qtpy 0.00017343352791719148
pypi psycopg2 0.0001725088225903308
pypi jaraco.tidelift 0.0001723839480266684
pypi sphinxcontrib-websupport 0.00017166029478928849
pypi netcdf4 0.0001715143265308556
pypi lark-parser 0.00017099083888047945
pypi types-requests 0.00016893514945832378
pypi prompt-toolkit 0.00016890694517013936
pypi gdal 0.00016830361273890954
pypi gffutils 0.00016786994778401418
pypi jaxlib 0.0001677079120348738
pypi scikit-bio 0.0001676479702510071
pypi sphinxcontrib-bibtex 0.00016716212191531188
pypi pysynphot 0.00016705203347225787
pypi snakemake 0.00016619731949178804
pypi monotonic 0.00016554333457585496
pypi opt-einsum 0.0001631286943273058
pypi pyephem 0.00016289434597039384
pypi markdown 0.00016202610438879146
pypi json-tricks 0.00016174990961677512
pypi sentence-transformers 0.00016106290672451194
pypi pathlib2 0.00015945665266029756
pypi dm-tree 0.0001587439949648239
pypi multisplitby 0.0001586767895878525
pypi gunicorn 0.00015834014363647362
pypi jedi 0.00015713982967360476
pypi fire 0.0001568236196983938
pypi camb 0.00015627864160848722
pypi python-dotenv 0.00015570298168696964
pypi python-libsbml 0.00015507192601895196
pypi shapely 0.0001537275750709799
pypi ete3 0.00015251265365148227
pypi rsa 0.00015206523090769474
pypi unittest2 0.00015171627986535123
pypi matplotlib-inline 0.00015108855720282925
pypi streamlit 0.00015097727249251111
pypi texext 0.0001508252580756024
pypi typed-ast 0.00015038627767253456
pypi pickleshare 0.00014915780683933663
pypi bmipy 0.00014913232104121475
pypi nb2plots 0.0001491227339442476
pypi tensorboard 0.00014742894904470343
pypi MDAnalysis 0.0001470991880981646
pypi myst-parser 0.0001469308166361865
pypi jupyter-core 0.00014639437085111706
pypi pytest-runner 0.00014577946557630422
pypi pysqlite3 0.00014292841648590022
pypi pymultinest 0.0001422714675057408
pypi python-levenshtein 0.00014220832042144408
pypi nanoget 0.00014170281995661607
pypi tensorboard-plugin-wit 0.00014151902049036572
pypi sqlparse 0.0001412969388495316
pypi PyWavelets 0.0001412788746763638
pypi nbodykit 0.00014100816031401714
pypi backcall 0.00014082216910689063
pypi ginga 0.00014065532595045096
pypi cached_property 0.0001406104741245739
pypi pyfakefs 0.00014018860428240452
pypi diskcache 0.0001397724035717321
pypi blinker 0.00013929110165398215
pypi httpx 0.0001388518116907585
pypi pyflakes 0.00013865114929217305
pypi ipython-genutils 0.00013825382098559206
pypi CommonMark 0.00013792215918571665
pypi dash 0.00013769442086839152
pypi elasticsearch 0.00013731026508292
pypi Python-Deprecated 0.00013720173535791756
pypi flufl.flake8 0.0001369673461479143
pypi fastprogress 0.00013683223120409215
pypi dendropy 0.00013593766139861587
pypi simframe 0.00013473039975209173
pypi mypy-extensions 0.00013456520649442595
pypi boto3 0.00013406248164401737
pypi pyregion 0.00013313746990536578
pypi argh 0.00013273422167131495
pypi pyuvdata 0.00013123644251626898
pypi multiprocessing 0.00013123644251626898
pypi rebound 0.00013112072144634305
pypi oauthlib 0.0001309326473822544
pypi readme-renderer 0.00013052408404636148
pypi spiceypy 0.00012995816547877286
pypi py-cpuinfo 0.00012986584547050925
pypi jellyfish 0.0001296962168003383
pypi ruff 0.00012945664777115376
pypi pyreadline3 0.00012939861957873724
pypi pyreadline 0.00012939861957873724
pypi s3fs 0.00012897538190746684
pypi plac 0.00012854186621404624
pypi periodictable 0.00012848636556313627
pypi sphinx-design 0.00012696951335363239
pypi jupyterlab-widgets 0.00012670649612248975
pypi lalsuite 0.00012609053018090063
pypi sphinx-autoapi 0.00012581417487068244
pypi galpy 0.00012575689494886893
pypi email-validator 0.0001257378308312235
pypi tensorboard-data-server 0.00012572241790890617
pypi widgetsnbextension 0.0001253065431690368
pypi python-utils 0.00012431044370880094
pypi django 0.00012414563292623989
pypi lenstronomy 0.0001240057845263919
pypi setuptools-scm 0.0001231672948158855
pypi panel 0.00012274488034673728
pypi sfdmap 0.00012246395304325636
pypi chainconsumer 0.00012246395304325636
pypi mccabe 0.0001224041634240826
pypi setuptools_scm_git_archive 0.0001222885032537961
pypi livereload 0.00012205008606885102
pypi tables 0.00012204318622883208
pypi parasail 0.00012188207670854092
pypi pytest-mock 0.00012157581889762911
pypi pyia 0.00012145336225596529
pypi google-auth 0.00012128219788422132
pypi build 0.00012093515723747301
pypi inflection 0.00012079480257159922
pypi munch 0.00012050753577481609
pypi pybullet 0.00012025328569605716
pypi astrodendro 0.00012022861306941431
pypi pyraf 0.0001196958952110796
pypi distributed 0.00011953346867228723
pypi uncertainties 0.00011944720788903763
pypi questplus 0.0001193058568329718
pypi intervalTree 0.0001193058568329718
pypi udatetime 0.0001193058568329718
pypi ruamel.YAML 0.0001193058568329718
pypi requests_file 0.0001193058568329718
pypi nrpylatex 0.0001193058568329718
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Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed.