{

  "links": {
    "self": "https://rseng.github.io/rseng/api/taxonomy/"
  },

  "data": [

        
            {
                "uid": "RSE-taxonomy-analysis",
                "name": "Domain-specific analysis software",
                "path": "Software to directly conduct research >> Domain-specific software >> Domain-specific analysis software",
                "color": "darkorange",
                "example": "SPM, fsl, afni for neuroscience",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-application-programming-interfaces",
                "name": "Application Programming Interfaces",
                "path": "Software to support research >> Used for research but not explicitly for it >> Application Programming Interfaces",
                "color": "darkturquoise",
                "example": "Pubmed, arXiv, Orcid, etc.",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-communication-tools",
                "name": "Communication tools or platforms",
                "path": "Software to support research >> Incidentally used for research >> Communication tools or platforms",
                "color": "mediumturquoise",
                "example": "email, slack, etc.",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-data-collection",
                "name": "Data collection",
                "path": "Software to directly conduct research >> General software >> Data collection",
                "color": "darksalmon",
                "example": "web-based experiments or portals, command line clients or libraries",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-databases",
                "name": "Databases",
                "path": "Software to support research >> Used for research but not explicitly for it >> Databases",
                "color": "darkkhaki",
                "example": "container registry, software database, data text files, etc.",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-domain-hardware",
                "name": "Domain-specific hardware",
                "path": "Software to directly conduct research >> Domain-specific software >> Domain-specific hardware",
                "color": "darkgray",
                "example": "software for physics to control lab equipment",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-frameworks",
                "name": "Frameworks",
                "path": "Software to support research >> Used for research but not explicitly for it >> Frameworks",
                "color": "darkseagreen",
                "example": "documentation generators, content management systems, django",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-helper-libraries",
                "name": "Formatting, indexing, or other small helper libraries",
                "path": "Software to support research >> Incidentally used for research >> Formatting, indexing, or other small helper libraries",
                "color": "brown",
                "example": "converters, string formatting, etc.",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-ide-research",
                "name": "Interactive development environments for research",
                "path": "Software to support research >> Explicitly for research >> Interactive development environments for research",
                "color": "mediumorchid",
                "example": "Matlab, Jupyter, Rstudio",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-infrastructure",
                "name": "Infrastructure",
                "path": "Software to support research >> Incidentally used for research >> Infrastructure",
                "color": "blue",
                "example": "orchestration tools, clusters, or server management",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-numerical-libraries",
                "name": "Numerical libraries",
                "path": "Software to directly conduct research >> General software >> Numerical libraries",
                "color": "darkorchid",
                "example": "includes optimization, statistics, simulation, e.g., numpy, scikit-learn",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-operating-systems",
                "name": "Operating systems",
                "path": "Software to support research >> Incidentally used for research >> Operating systems",
                "color": "mediumspringgreen",
                "example": "linux",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-optimized",
                "name": "Domain-specific optimized software",
                "path": "Software to directly conduct research >> Domain-specific software >> Domain-specific optimized software",
                "color": "darkolivegreen",
                "example": "neuroscience software optimized for GPU",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-package-management",
                "name": "Package Management",
                "path": "Software to support research >> Incidentally used for research >> Package Management",
                "color": "indianred",
                "example": "spack, apt, yum, npm",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-personal-scheduling-task-management",
                "name": "Personal scheduling and task management",
                "path": "Software to support research >> Incidentally used for research >> Personal scheduling and task management",
                "color": "darkred",
                "example": "Asana, Trello, etc.",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-provenance-metadata-tools",
                "name": "Provenance and metadata collection tools",
                "path": "Software to support research >> Explicitly for research >> Provenance and metadata collection tools",
                "color": "mediumseagreen",
                "example": "schema.org, codemeta, etc.",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-testing",
                "name": "Testing",
                "path": "Software to support research >> Incidentally used for research >> Testing",
                "color": "aquamarine",
                "example": "testing software or libraries, CI for testing.",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-text-editors-ides",
                "name": "Text editors and integrated development environments",
                "path": "Software to support research >> Incidentally used for research >> Text editors and integrated development environments",
                "color": "mediumslateblue",
                "example": "atom, gedit, vim",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-version-control",
                "name": "Version control",
                "path": "Software to support research >> Incidentally used for research >> Version control",
                "color": "mediumblue",
                "example": "git, svn",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-virtualization",
                "name": "Virtualization technologies",
                "path": "Software to support research >> Incidentally used for research >> Virtualization technologies",
                "color": "orange",
                "example": "containers (singularity, docker, podman) and virtual machines",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-visualization",
                "name": "Visualization",
                "path": "Software to directly conduct research >> General software >> Visualization",
                "color": "darkviolet",
                "example": "interfaces to interact with, understand, and see data, plotting tools",
                "date": "2021-10-02 20:13:19 +0000"
            },

            {
                "uid": "RSE-taxonomy-workflow-managers",
                "name": "Workflow managers",
                "path": "Software to support research >> Explicitly for research >> Workflow managers",
                "color": "mediumaquamarine",
                "example": "snakemake, cromwell, nextflow, slurm, etc.",
                "date": "2021-10-02 20:13:19 +0000"
            }

]
}